2VI4 Plant Protein date Nov 26, 2007
title Atomic Resolution (1.10 A) Structure Of Purified Thaumatin I Sodium Dl-Tartrate At 6 C.
authors J.Jakoncic, N.Asherie, C.Ginsberg
compound source
Molecule: Thaumatin-1
Chain: A
Synonym: Thaumatin, Thaumatin I
 Organism_scientific: Thaumatococcus Daniellii
Organism_common: Katemfe, Miracle Fruit
Organism_taxid: 4621
Other_details: From Aril.
symmetry Space Group: P 41 21 2
R_factor 0.125 R_Free 0.140
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.921 57.921 149.946 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand GOL, TLA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (2vi4.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 2VI4
  • CSU: Contacts of Structural Units for 2VI4
  • Likely Quarternary Molecular Structure file(s) for 2VI4
  • Structure Factors (730 Kb)
  • Retrieve 2VI4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VI4 from S2C, [Save to disk]
  • Re-refined 2vi4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VI4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VI4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VI4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vi4] [2vi4_A]
  • SWISS-PROT database: [P02883]
  • Domain organization of [THM1_THADA] by SWISSPFAM
  • Domain found in 2VI4: [THN ] by SMART
    • Other resources with information on 2VI4
  • Community annotation for 2VI4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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