2VJ1 Hydrolase date Dec 06, 2007
title A Structural View Of The Inactivation Of The Sars-Coronaviru Proteinase By Benzotriazole Esters
authors K.H.G.Verschueren, K.Pumpor, S.Anemueller, J.R.Mesters, R.Hilgen
compound source
Molecule: Sars Coronavirus Main Proteinase
Chain: A, B
Fragment: Residues 3242-3544
Ec: 3.4.34.-
Engineered: Yes
Organism_scientific: Human Sars Coronavirus
Organism_taxid: 227859
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.256
length a length b length c angle alpha angle beta angle gamma
52.231 97.760 67.709 90.00 103.01 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand BEZ, DMS, XP1 enzyme Hydrolase E.C.3.4.34 BRENDA
note 2VJ1 supersedes 2CGG
A, B

Primary referenceA Structural View of the Inactivation of the SARS Coronavirus Main Proteinase by Benzotriazole Esters., Verschueren KH, Pumpor K, Anemuller S, Chen S, Mesters JR, Hilgenfeld R, Chem Biol. 2008 Jun;15(6):597-606. PMID:18559270
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (2vj1.pdb1.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 2VJ1
  • CSU: Contacts of Structural Units for 2VJ1
  • Likely Quarternary Molecular Structure file(s) for 2VJ1
  • Structure Factors (233 Kb)
  • Retrieve 2VJ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VJ1 from S2C, [Save to disk]
  • Re-refined 2vj1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VJ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VJ1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VJ1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vj1_A] [2vj1_B] [2vj1]
  • SWISS-PROT database: [A7J8L3] [P0C6X7]
  • Domain organization of [A7J8L3_CVHSA] [R1AB_CVHSA] by SWISSPFAM
  • Other resources with information on 2VJ1
  • Community annotation for 2VJ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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