2VJ2 Protein-Binding date Dec 06, 2007
title Human Jagged-1, Domains Dsl And Egfs1-3
authors S.Johnson, J.Cordle, J.Z.Tay, P.Roversi, P.A.Handford, S.M.Lea
compound source
Molecule: Jagged-1
Chain: A, B
Fragment: Dsl Domain And Egfs1-3, Residues 185-335
Synonym: Jagged1, Hj1, Cd339 Antigen, Jagged-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nm554
Expression_system_plasmid: Pqe30
symmetry Space Group: C 1 2 1
R_factor 0.220 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.000 102.300 62.700 90.00 114.30 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand MLT enzyme
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA conserved face of the Jagged/Serrate DSL domain is involved in Notch trans-activation and cis-inhibition., Cordle J, Johnson S, Tay JZ, Roversi P, Wilkin MB, de Madrid BH, Shimizu H, Jensen S, Whiteman P, Jin B, Redfield C, Baron M, Lea SM, Handford PA, Nat Struct Mol Biol. 2008 Aug;15(8):849-57. Epub 2008 Jul 27. PMID:18660822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2vj2.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (2vj2.pdb2.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2VJ2
  • CSU: Contacts of Structural Units for 2VJ2
  • Likely Quarternary Molecular Structure file(s) for 2VJ2
  • Structure Factors (88 Kb)
  • Retrieve 2VJ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VJ2 from S2C, [Save to disk]
  • Re-refined 2vj2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VJ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VJ2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VJ2, from MSDmotif at EBI
  • Fold representative 2vj2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vj2] [2vj2_B] [2vj2_A]
  • SWISS-PROT database: [P78504]
  • Domain organization of [JAG1_HUMAN] by SWISSPFAM
  • Domains found in 2VJ2: [DSL] [EGF] [EGF_CA ] by SMART
  • Other resources with information on 2VJ2
  • Community annotation for 2VJ2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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