2VJ9 Hydrolase date Dec 07, 2007
title Human Bace-1 In Complex With N-((1s,2r)-3-(Cyclohexylamino)- 1-(Phenylmethyl)Propyl)-3-(Ethylamino)-5-(2-Oxo-1-Pyrrolidi Benzamide
authors B.Clarke, E.Demont, C.Dingwall, R.Dunsdon, A.Faller, J.Hawkins, I. D.Macpherson, G.Maile, R.Matico, P.Milner, J.Mosley, A.Naylor, A. S.Redshaw, D.Riddell, P.Rowland, V.Soleil, K.Smith, S.Stanway, G. S.Sweitzer, P.Theobald, D.Vesey, D.S.Walter, J.Ward, G.Wayne
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Residues 61-452
Synonym: Beta-Site App Cleaving Enzyme 1, Beta-Site Amyloid Protein Cleaving Enzyme 1, Membrane-Associated Aspartic Pro Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2, Bace-1;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_tissue: Ovary
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.037 77.234 104.822 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand VG7 BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBACE-1 inhibitors part 2: Identification of hydroxy ethylamines (HEAs) with reduced peptidic character., Clarke B, Demont E, Dingwall C, Dunsdon R, Faller A, Hawkins J, Hussain I, Macpherson D, Maile G, Matico R, Milner P, Mosley J, Naylor A, O'Brien A, Redshaw S, Riddell D, Rowland P, Soleil V, Smith KJ, Stanway S, Stemp G, Sweitzer S, Theobald P, Vesey D, Walter DS, Ward J, Wayne G, Bioorg Med Chem Lett. 2007 Dec 15;. PMID:18166458
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2vj9.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2VJ9
  • CSU: Contacts of Structural Units for 2VJ9
  • Likely Quarternary Molecular Structure file(s) for 2VJ9
  • Structure Factors (355 Kb)
  • Retrieve 2VJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VJ9 from S2C, [Save to disk]
  • Re-refined 2vj9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VJ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VJ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vj9] [2vj9_A]
  • SWISS-PROT database: [P56817]
  • Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.
  • Domain organization of [BACE1_HUMAN] by SWISSPFAM
  • Other resources with information on 2VJ9
  • Community annotation for 2VJ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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