2VJB Hydrolase date Dec 09, 2007
title Torpedo Californica Acetylcholinesterase In Complex With A N Hydrolysable Substrate Analogue, 4-Oxo-N,N,N- Trimethylpent - Orthorhombic Space Group - Dataset D At 100k
authors J.P.Colletier, D.Bourgeois, D.Fournier, I.Silman, J.L.Sussman, M.
compound source
Molecule: Acetylcholinesterase
Chain: A, B
Fragment: Residues 22-558
Synonym: Ache
Ec: 3.1.1.7
Organism_scientific: Torpedo Californica
Organism_common: Pacific Electric Ray
Organism_taxid: 7787
Variant: G2 Form
Organ: Electric Organ
Tissue: Electroplaque
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.070 107.290 151.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.39 Å
ligand CCD, CL, NAG, PGE enzyme Hydrolase E.C.3.1.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • acetylcholine catabolic proc...

  • Primary referenceShoot-and-Trap: use of specific x-ray damage to study structural protein dynamics by temperature-controlled cryo-crystallography., Colletier JP, Bourgeois D, Sanson B, Fournier D, Sussman JL, Silman I, Weik M, Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11742-7. Epub 2008 Aug 13. PMID:18701720
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (2vjb.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (2vjb.pdb2.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 2VJB
  • CSU: Contacts of Structural Units for 2VJB
  • Likely Quarternary Molecular Structure file(s) for 2VJB
  • Structure Factors (470 Kb)
  • Retrieve 2VJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VJB from S2C, [Save to disk]
  • Re-refined 2vjb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VJB in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VJB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VJB, from MSDmotif at EBI
  • Fold representative 2vjb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vjb] [2vjb_B] [2vjb_A]
  • SWISS-PROT database: [P04058]
  • Domain organization of [ACES_TORCA] by SWISSPFAM
  • Other resources with information on 2VJB
  • Community annotation for 2VJB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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