2VJO	Transferase	date	Dec 11, 2007
title	Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-Coa Intermediates And Oxalate
authors	C.L.Berthold, C.G.Toyota, N.G.J.Richards, Y.Lindqvist
compound		source
Molecule: Formyl-Coenzyme A Transferase Chain: A, B Synonym: Formyl-Coa Transferase Ec: 2.8.3.16 Engineered: Yes Mutation: Yes		Organism_scientific: Oxalobacter Formigenes Organism_taxid: 847 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet-9a
symmetry	Space Group: I 4	R_factor 0.206 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 153.593 153.593 98.055 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CL, COA, EPE, OXL	enzyme	Transferase E.C.2.8.3.16 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Reinvestigation of the Catalytic Mechanism of Formyl-CoA Transferase, a Class III CoA-transferase., Berthold CL, Toyota CG, Richards NG, Lindqvist Y, J Biol Chem. 2008 Mar 7;283(10):6519-29. Epub 2007 Dec 27. PMID:18162462

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (2vjo.pdb1.gz) 144 Kb LPC: Ligand-Protein Contacts for 2VJO CSU: Contacts of Structural Units for 2VJO Likely Quarternary Molecular Structure file(s) for 2VJO Structure Factors (745 Kb) Retrieve 2VJO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VJO from S2C, [Save to disk] Re-refined 2vjo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VJO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VJO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VJO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vjo_B] [2vjo] [2vjo_A] SWISS-PROT database: [O06644] Domain organization of [FCTA_OXAFO] by SWISSPFAM

Other resources with information on 2VJO

Community annotation for 2VJO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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