2VLL	Immune System	date	Jan 15, 2008
title	The Structural Dynamics And Energetics Of An Immunodominant T-Cell Receptor Are Programmed By Its Vbeta Domain
authors	J.Ishizuka, G.Stewart-Jones, A.Van Der Merwe, J.Bell, A.Mcmichael, Y.Jones
compound		source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha Chain; Chain: A, D Fragment: Hla-A2, Residues 25-300 Synonym: Mhc Class I Antigen A2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Beta-2-Microglobulin Chain: B, E Fragment: Residues 21-119 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Flu Matrix Peptide Chain: C, F		Synthetic: Yes Organism_scientific: Unidentified Influenza Virus Organism_taxid: 11309
symmetry	Space Group: P 1	R_factor 0.192 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.615 62.335 74.521 82.33 76.44 78.42
method	X-Ray Diffraction	resolution	1.6 Å
Gene Ontology	Chain Function Process Component E, B cellular response to iron io...
Primary reference	The structural dynamics and energetics of an immunodominant T cell receptor are programmed by its Vbeta domain., Ishizuka J, Stewart-Jones GB, van der Merwe A, Bell JI, McMichael AJ, Jones EY, Immunity. 2008 Feb;28(2):171-82. PMID:18275829

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk] Biological Unit Coordinates (2vll.pdb1.gz) 75 Kb Biological Unit Coordinates (2vll.pdb2.gz) 77 Kb CSU: Contacts of Structural Units for 2VLL Likely Quarternary Molecular Structure file(s) for 2VLL Structure Factors (587 Kb) Retrieve 2VLL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VLL from S2C, [Save to disk] Re-refined 2vll structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2VLL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VLL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vll_D] [2vll_E] [2vll_F] [2vll] [2vll_C] [2vll_A] [2vll_B] SWISS-PROT database: [P01892] [P61769] Domain organization of [1A02_HUMAN] [B2MG_HUMAN] by SWISSPFAM Domain found in 2VLL: [IGc1 ] by SMART

Other resources with information on 2VLL

Community annotation for 2VLL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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