2VM8	Signaling Protein	date	Jan 24, 2008
title	Human Crmp-2 Crystallised In The Presence Of Mg
authors	P.Kursula
compound		source
Molecule: Dihydropyrimidinase-Related Protein 2 Chain: A, B, C, D Fragment: Residues 13-490 Synonym: Collapsin Response Mediator Protein 2, Drp-2, Crmp Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: P 21 21 21	R_factor 0.256 R_Free 0.325
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.510 126.240 209.750 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal and solution structure, stability and post-translational modifications of collapsin response mediator protein 2., Majava V, Loytynoja N, Chen WQ, Lubec G, Kursula P, FEBS J. 2008 Aug 11. PMID:18699782

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk] Biological Unit Coordinates (2vm8.pdb1.gz) 324 Kb LPC: Ligand-Protein Contacts for 2VM8 CSU: Contacts of Structural Units for 2VM8 Likely Quarternary Molecular Structure file(s) for 2VM8 Structure Factors (1377 Kb) Retrieve 2VM8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VM8 from S2C, [Save to disk] Re-refined 2vm8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VM8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VM8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VM8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vm8_C] [2vm8_D] [2vm8_A] [2vm8] [2vm8_B] SWISS-PROT database: [Q16555] Domain organization of [DPYL2_HUMAN] by SWISSPFAM

Other resources with information on 2VM8

Community annotation for 2VM8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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