2VN0	Oxidoreductase	date	Jan 30, 2008
title	Cyp2c8dh Complexed With Troglitazone
authors	G.A.Schoch, J.K.Yano, S.Sansen, C.D.Stout, E.F.Johnson
compound		source
Molecule: Cytochrome P450 2c8 Chain: A Fragment: Catalytic Domain, Residues 28-490 Synonym: Cypiic8, P450 Form 1, P450 Mp- 12mp-20, P450 Iic2 Mephenytoin 4-Hydroxylase; Ec: 1.14.14.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_vector: Pcwori
symmetry	Space Group: I 2 2 2	R_factor 0.218 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.200 136.090 163.240 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	HEM, PLM, TDZ	enzyme	Oxidoreductase E.C.1.14.14.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Determinants of Cytochrome P450 2C8 Substrate Binding: STRUCTURES OF COMPLEXES WITH MONTELUKAST, TROGLITAZONE, FELODIPINE, AND 9-CIS-RETINOIC ACID., Schoch GA, Yano JK, Sansen S, Dansette PM, Stout CD, Johnson EF, J Biol Chem. 2008 Jun 20;283(25):17227-37. Epub 2008 Apr 15. PMID:18413310

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk] Biological Unit Coordinates (2vn0.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 2VN0 CSU: Contacts of Structural Units for 2VN0 Likely Quarternary Molecular Structure file(s) for 2VN0 Structure Factors (173 Kb) Retrieve 2VN0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VN0 from S2C, [Save to disk] Re-refined 2vn0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VN0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VN0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VN0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vn0] [2vn0_A] SWISS-PROT database: [P10632] Domain organization of [CP2C8_HUMAN] by SWISSPFAM

Other resources with information on 2VN0

Community annotation for 2VN0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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