2VN1	Isomerase	date	Jan 30, 2008
title	Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Fkbp35 In Complex With Fk506
authors	M.Kotaka, R.Alag, H.Ye, P.R.Preiser, H.S.Yoon, J.Lescar
compound		source
Molecule: 70 Kda Peptidylprolyl Isomerase Chain: A, B Fragment: Fk506-Binding Domain, Residues 1-127 Synonym: Plasmodium Falciparum Fkbp35 Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Plasmodium Falciparum Organism_taxid: 36329 Strain: 3d7 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet29b
symmetry	Space Group: P 43 21 2	R_factor 0.194 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.064 63.064 167.990 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	FK5	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure of the FK506 Binding Domain of Plasmodium falciparum FKBP35 in Complex with FK506., Kotaka M, Ye H, Alag R, Hu G, Bozdech Z, Preiser PR, Yoon HS, Lescar J, Biochemistry. 2008 May 9;. PMID:18465874

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (2vn1.pdb1.gz) 23 Kb Biological Unit Coordinates (2vn1.pdb2.gz) 23 Kb LPC: Ligand-Protein Contacts for 2VN1 CSU: Contacts of Structural Units for 2VN1 Likely Quarternary Molecular Structure file(s) for 2VN1 Structure Factors (107 Kb) Retrieve 2VN1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VN1 from S2C, [Save to disk] Re-refined 2vn1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VN1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VN1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VN1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vn1] [2vn1_A] [2vn1_B] SWISS-PROT database: [Q8I4V8] Domain organization of [Q8I4V8_PLAF7] by SWISSPFAM

Other resources with information on 2VN1

Community annotation for 2VN1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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