2VN9	Transferase	date	Jan 31, 2008
title	Crystal Structure Of Human Calcium Calmodulin Dependent Prot II Delta Isoform 1, Camkd
authors	A.K.Roos, P.Rellos, E.Salah, A.C.W.Pike, O.Fedorov, E.S.Pilka, F.V C.H.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, S.Knapp
compound		source
Molecule: Calciumcalmodulin-Dependent Protein Kinase Type Chain; Chain: A, B Fragment: Kinase Domain, Residues 11-309 Synonym: Cam-Kinase II Delta Chain, Cam Kinase II Subunit D Camk-II Subunit Delta, Calcium Calmodulin Dependent Protein Delta Isoform 1; Ec: 2.7.11.17 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: R3-Prare2 Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 32 2 1	R_factor 0.211 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.276 68.276 313.450 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CL, EPE, GVD, PO4	enzyme	Transferase E.C.2.7.11.17 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the CaMKIIdelta/calmodulin complex reveals the molecular mechanism of CaMKII kinase activation., Rellos P, Pike AC, Niesen FH, Salah E, Lee WH, von Delft F, Knapp S, PLoS Biol. 2010 Jul 27;8(7):e1000426. PMID:20668654

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (2vn9.pdb1.gz) 51 Kb Biological Unit Coordinates (2vn9.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 2VN9 CSU: Contacts of Structural Units for 2VN9 Likely Quarternary Molecular Structure file(s) for 2VN9 Structure Factors (505 Kb) Retrieve 2VN9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VN9 from S2C, [Save to disk] Re-refined 2vn9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VN9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VN9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VN9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vn9] [2vn9_B] [2vn9_A] SWISS-PROT database: [Q13557] Domain organization of [KCC2D_HUMAN] by SWISSPFAM Domain found in 2VN9: [S_TKc ] by SMART

Other resources with information on 2VN9

Community annotation for 2VN9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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