2VNF	Cell Cycle	date	Feb 04, 2008
title	Molecular Basis Of Histone H3k4me3 Recognition By Ing4
authors	A.Palacios, I.G.Munoz, D.Pantoja-Uceda, M.J.Marcaida, D.Torres, J.M.Martin-Garcia, I.Luque, G.Montoya, F.J.Blanco
compound		source
Molecule: Inhibitor Of Growth Protein 4 Chain: A, C Fragment: Residues 187-245 Synonym: Ing 4, P29ing4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet11d
Molecule: Histone H3 Chain: B, D Fragment: Residues 2-11 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 43	R_factor 0.156 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.516 68.516 28.174 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.76 Å
ligand	DTT, DTU, M3L, NA, ZN	enzyme
Gene Ontology	Chain Function Process Component A, C
Primary reference	Molecular Basis of Histone H3K4me3 Recognition by ING4., Palacios A, Munoz IG, Pantoja-Uceda D, Marcaida MJ, Torres D, Martin-Garcia JM, Luque I, Montoya G, Blanco FJ, J Biol Chem. 2008 Jun 6;283(23):15956-15964. Epub 2008 Apr 1. PMID:18381289

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (2vnf.pdb1.gz) 22 Kb Biological Unit Coordinates (2vnf.pdb2.gz) 25 Kb LPC: Ligand-Protein Contacts for 2VNF CSU: Contacts of Structural Units for 2VNF Likely Quarternary Molecular Structure file(s) for 2VNF Structure Factors (91 Kb) Retrieve 2VNF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VNF from S2C, [Save to disk] Re-refined 2vnf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VNF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VNF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VNF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vnf_A] [2vnf_D] [2vnf_C] [2vnf] [2vnf_B] SWISS-PROT database: [Q9UNL4] Domain organization of [ING4_HUMAN] by SWISSPFAM Domain found in 2VNF: [PHD ] by SMART

Other resources with information on 2VNF

Community annotation for 2VNF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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