2VNN	Hydrolase	date	Feb 05, 2008
title	Human Bace-1 In Complex With 7-Ethyl-N-((1s,2r)-2-Hydroxy-1- (Phenylmethyl)-3-(((3-(Trifluoromethyl)Phenyl)Methyl)Amino) Methyl-3,4-Dihydro-1h-(1,2,5)Thiadiazepino(3,4,5-Hi)Indole- Carboxamide 2,2-Dioxide
authors	N.Charrier, B.Clarke, L.Cutler, E.Demont, C.Dingwall, R.Dunsdon, P J.Hawkins, C.Howes, I.Hussain, P.Jeffrey, G.Maile, R.Matico, J.Mo A.Naylor, A.Obrien, S.Redshaw, P.Rowland, V.Soleil, K.J.Smith, S. P.Theobald, D.Vesey, D.S.Walter, G.Wayne
compound		source
Molecule: Beta-Secretase 1 Chain: A Fragment: Residues 61-452 Synonym: Beta-Site App Cleaving Enzyme 1, Beta-Site Amyloid Protein Cleaving Enzyme 1, Membrane-Associated Aspartic Pro Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2, Bace-1; Ec: 3.4.23.46 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_cell_line: Cho
symmetry	Space Group: P 21 21 21	R_factor 0.173 R_Free 0.211
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.469 76.699 104.174 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.87 Å
ligand	CM7 BindingDB	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Second Generation of Hydroxyethylamine BACE-1 Inhibitors: Optimizing Potency and Oral Bioavailability., Charrier N, Clarke B, Cutler L, Demont E, Dingwall C, Dunsdon R, East P, Hawkins J, Howes C, Hussain I, Jeffrey P, Maile G, Matico R, Mosley J, Naylor A, O'Brien A, Redshaw S, Rowland P, Soleil V, Smith KJ, Sweitzer S, Theobald P, Vesey D, Walter DS, Wayne G, J Med Chem. 2008 May 6;. PMID:18457381

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (2vnn.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 2VNN CSU: Contacts of Structural Units for 2VNN Likely Quarternary Molecular Structure file(s) for 2VNN Structure Factors (242 Kb) Retrieve 2VNN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VNN from S2C, [Save to disk] Re-refined 2vnn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VNN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VNN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VNN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vnn_A] [2vnn] SWISS-PROT database: [P56817] Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB. Domain organization of [BACE1_HUMAN] by SWISSPFAM

Other resources with information on 2VNN

Community annotation for 2VNN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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