2VPK Transcription date Feb 29, 2008
title Crystal Structure Of The Btb Domain Of Human Myoneurin
authors C.D.O.Cooper, J.W.Murray, A.Bullock, A.C.W.Pike, F.Von Delft, P.Filippakopoulos, E.Salah, A.Edwards, C.H.Arrowsmith, C.Bountr J.Weigelt, S.Knapp
compound source
Molecule: Myoneurin
Chain: A
Fragment: Btb Domain, Residues 4-117
Synonym: Btb Domain Of Myoneurin, Zinc Finger, Btb Domain-C Protein 31;
Engineered: Yes
Other_details: Intermolecular Disulfide Link Between Symmet Cys6.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Neuromuscular System
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Rare2
Expression_system_vector: Pnic28-Bsa4
symmetry Space Group: P 61 2 2
R_factor 0.194 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
55.688 55.688 126.201 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
note 2VPK is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2vpk.pdb1.gz) 115 Kb
  • CSU: Contacts of Structural Units for 2VPK
  • Likely Quarternary Molecular Structure file(s) for 2VPK
  • Structure Factors (148 Kb)
  • Retrieve 2VPK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VPK from S2C, [Save to disk]
  • Re-refined 2vpk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VPK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VPK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VPK, from MSDmotif at EBI
  • Fold representative 2vpk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vpk] [2vpk_A]
  • SWISS-PROT database: [Q9NPC7]
  • Domain organization of [MYNN_HUMAN] by SWISSPFAM
  • Domain found in 2VPK: [BTB ] by SMART
  • Other resources with information on 2VPK
  • Community annotation for 2VPK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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