2VR3 Cell Adhesion date Mar 25, 2008
title Structural And Biochemical Characterization Of Fibrinogen Binding To Clfa From Staphylocccus Aureus
authors V.K.Ganesh, J.J.Rivera, E.Smeds, M.G.Bowden, E.R.Wann, S.Gurusidappa, J.R.Fitzgerald, M.Hook
compound source
Molecule: Clumping Factor A
Chain: A, B
Fragment: N2n3, Residues 229-545
Synonym: Fibrinogen-Binding Protein A, Fibrinogen Receptor A;
Engineered: Yes
Mutation: Yes
Other_details: Engineered Disulfide Bond Between 327 And 541;
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fibrinogen Gamma-Chain
Chain: C, D
Fragment: C-Terminal Gamma-Chain Peptide Analog, Residues 425-437;
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.21116 R_Free 0.27931
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.427 61.836 81.777 85.44 81.84 82.45
method X-Ray Diffractionresolution 1.95 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA structural model of the Staphylococcus aureus ClfA-fibrinogen interaction opens new avenues for the design of anti-staphylococcal therapeutics., Ganesh VK, Rivera JJ, Smeds E, Ko YP, Bowden MG, Wann ER, Gurusiddappa S, Fitzgerald JR, Hook M, PLoS Pathog. 2008 Nov;4(11):e1000226. Epub 2008 Nov 28. PMID:19043557
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2vr3.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (2vr3.pdb2.gz) 55 Kb
  • CSU: Contacts of Structural Units for 2VR3
  • Likely Quarternary Molecular Structure file(s) for 2VR3
  • Structure Factors (636 Kb)
  • Retrieve 2VR3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VR3 from S2C, [Save to disk]
  • Re-refined 2vr3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VR3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VR3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VR3, from MSDmotif at EBI
  • Fold representative 2vr3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vr3_D] [2vr3] [2vr3_A] [2vr3_C] [2vr3_B]
  • SWISS-PROT database: [Q2G015] [P02679]
  • Domain organization of [CLFA_STAA8] [FIBG_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2VR3 with the sequences similar proteins can be viewed for 2VR3's classification [CLFA_STAA8] [FIBG_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CLFA_STAA8] [FIBG_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2VR3
  • Community annotation for 2VR3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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