2VSY	Transferase	date	May 01, 2008
title	Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure
authors	A.W.Schuettelkopf, A.J.Clarke, D.M.F.Van Aalten
compound		source
Molecule: Xcc0866 Chain: A, B Engineered: Yes		Organism_scientific: Xanthomonas Campestris Pv. Campestris Organism_taxid: 190485 Atcc: 33913 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.523 100.096 156.274 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CL, NHE, PEG, PR	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural insights into mechanism and specificity of O-GlcNAc transferase., Clarke AJ, Hurtado-Guerrero R, Pathak S, Schuttelkopf AW, Borodkin V, Shepherd SM, Ibrahim AF, van Aalten DM, EMBO J. 2008 Oct 22;27(20):2780-8. Epub 2008 Sep 25. PMID:18818698

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk] Biological Unit Coordinates (2vsy.pdb1.gz) 88 Kb Biological Unit Coordinates (2vsy.pdb2.gz) 89 Kb LPC: Ligand-Protein Contacts for 2VSY CSU: Contacts of Structural Units for 2VSY Likely Quarternary Molecular Structure file(s) for 2VSY Structure Factors (558 Kb) Retrieve 2VSY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VSY from S2C, [Save to disk] Re-refined 2vsy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VSY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VSY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VSY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vsy] [2vsy_B] [2vsy_A] SWISS-PROT database: [Q8PC69] Domain organization of [Q8PC69_XANCP] by SWISSPFAM Domain found in 2VSY: [TPR ] by SMART

Other resources with information on 2VSY

Community annotation for 2VSY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---