2VUW Transferase date May 30, 2008
title Structure Of Human Haspin Kinase Domain
authors J.Eswaran, J.W.Murray, P.Filippakopoulos, M.Soundararajan, A.C.W F.Von Delft, S.Picaud, T.Keates, O.King, M.Wickstroem, C.Bountra A.M.Edwards, C.H.Arrowsmith, O.Fedorov, N.Burgess-Brown, J.Bray
compound source
Molecule: Serinethreonine-Protein Kinase Haspin
Chain: A
Fragment: Kinase Domain, Residues 465-798
Synonym: Haspin, Haploid Germ Cell-Specific Nuclear Protein H-Haspin, Germ Cell-Specific Gene 2 Protein;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Germ Cell
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pnic28-Bsa4
Other_details: Expression System Is Phage Resistance Rosett
symmetry Space Group: P 21 21 21
R_factor 0.147 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.661 78.775 79.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 5ID, DMS, IOD, MPD, MSE, NI enzyme Transferase E.C.2.7.11.1 BRENDA
note 2VUW is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and functional characterization of the atypical human kinase haspin., Eswaran J, Patnaik D, Filippakopoulos P, Wang F, Stein RL, Murray JW, Higgins JM, Knapp S, Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20198-203. Epub 2009 Nov 16. PMID:19918057
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (2vuw.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 2VUW
  • CSU: Contacts of Structural Units for 2VUW
  • Likely Quarternary Molecular Structure file(s) for 2VUW
  • Structure Factors (1116 Kb)
  • Retrieve 2VUW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VUW from S2C, [Save to disk]
  • Re-refined 2vuw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VUW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VUW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VUW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vuw] [2vuw_A]
  • SWISS-PROT database: [Q8TF76]
  • Domain organization of [HASP_HUMAN] by SWISSPFAM
  • Domains found in 2VUW: [DUF3635] [STYKc ] by SMART
  • Other resources with information on 2VUW
  • Community annotation for 2VUW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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