2VVK	Protein Binding	date	Jun 09, 2008
title	Grb2 Sh3c (1)
authors	M.Harkiolaki, T.Tsirka, S.M.Feller
compound		source
Molecule: Growth Factor Receptor-Bound Protein 2 Chain: A Fragment: Sh3 Domain, Residues 161-214 Synonym: Adapter Protein Grb2, Sh2sh3 Adapter Grb2, Protei Grb2 Sh3c; Engineered: Yes Other_details: N Terminal Gs Overhand Due To Thrombin Cleav		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pgex-2t
symmetry	Space Group: P 21 21 21	R_factor 0.159 R_Free 0.178
crystal cell	length a length b length c angle alpha angle beta angle gamma 25.405 38.681 50.870 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	GOL	enzyme
Primary reference	Distinct Binding Modes of Two Epitopes in Gab2 that Interact with the SH3C Domain of Grb2., Harkiolaki M, Tsirka T, Lewitzky M, Simister PC, Joshi D, Bird LE, Jones EY, O'Reilly N, Feller SM, Structure. 2009 Jun 10;17(6):809-22. PMID:19523899

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk] Biological Unit Coordinates (2vvk.pdb1.gz) 11 Kb LPC: Ligand-Protein Contacts for 2VVK CSU: Contacts of Structural Units for 2VVK Likely Quarternary Molecular Structure file(s) for 2VVK Structure Factors (83 Kb) Retrieve 2VVK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VVK from S2C, [Save to disk] Re-refined 2vvk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VVK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VVK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VVK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vvk] [2vvk_A] SWISS-PROT database: [P62993] Domain organization of [GRB2_HUMAN] by SWISSPFAM Domain found in 2VVK: [SH3 ] by SMART

Other resources with information on 2VVK

Community annotation for 2VVK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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