2VWM	Blood Clotting	date	Jun 26, 2008
title	Aminopyrrolidine Factor Xa Inhibitor
authors	K.Groebke-Zbinden, D.W.Banner, J.M.Benz, F.Blasco, G.Decoret, J.H B.Kuhn, N.Panday, F.Ricklin, P.Risch, D.Schlatter, M.Stahl, R.Ung
compound		source
Molecule: Activated Factor Xa Heavy Chain Chain: A, B Fragment: Peptidase S1 Domain, Residues 235-475 Ec: 3.4.21.6 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Factor X Light Chain Chain: K, L Fragment: Egf2, Residues 126-180 Ec: 3.4.21.6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.200 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.930 77.110 74.870 90.00 92.07 90.00
method	X-Ray Diffraction	resolution	1.96 Å
ligand	LZI, NA BindingDB	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Design of novel aminopyrrolidine factor Xa inhibitors from a screening hit., Zbinden KG, Anselm L, Banner DW, Benz J, Blasco F, Decoret G, Himber J, Kuhn B, Panday N, Ricklin F, Risch P, Schlatter D, Stahl M, Thomi S, Unger R, Haap W, Eur J Med Chem. 2009 Jul;44(7):2787-95. Epub 2009 Jan 3. PMID:19200624

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (2vwm.pdb1.gz) 54 Kb Biological Unit Coordinates (2vwm.pdb2.gz) 52 Kb Biological Unit Coordinates (2vwm.pdb3.gz) 45 Kb Biological Unit Coordinates (2vwm.pdb4.gz) 12 Kb Biological Unit Coordinates (2vwm.pdb5.gz) 43 Kb Biological Unit Coordinates (2vwm.pdb6.gz) 12 Kb LPC: Ligand-Protein Contacts for 2VWM CSU: Contacts of Structural Units for 2VWM Likely Quarternary Molecular Structure file(s) for 2VWM Structure Factors (830 Kb) Retrieve 2VWM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VWM from S2C, [Save to disk] Re-refined 2vwm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VWM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VWM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VWM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vwm_A] [2vwm_B] [2vwm] [2vwm_L] [2vwm_K] SWISS-PROT database: [P00742] Domain organization of [FA10_HUMAN] by SWISSPFAM Domains found in 2VWM: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 2VWM

Community annotation for 2VWM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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