2VXD Nuclear Protein date Jul 03, 2008
title The Structure Of The C-Terminal Domain Of Nucleophosmin
authors M.Bycroft, C.G.Grummitt
compound source
Molecule: Nucleophosmin
Chain: A
Fragment: C-Terminal Domain, Residues 214-265
Synonym: Npm, Nucleolar Phosphoprotein B23, Numatrin, Nucleolar Protein No38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 2VXD is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural consequences of nucleophosmin mutations in acute myeloid leukaemia., Grummitt CG, Townsley FM, Johnson CM, Warren AJ, Bycroft M, J Biol Chem. 2008 May 29;. PMID:18511415
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]
  • Biological Unit Coordinates (2vxd.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2VXD
  • Original NMR restraints for 2VXD from PDB
  • Retrieve 2VXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VXD from S2C, [Save to disk]
  • View 2VXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VXD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VXD, from MSDmotif at EBI
  • Fold representative 2vxd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vxd] [2vxd_A]
  • SWISS-PROT database: [P06748]
  • Domain organization of [NPM_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2VXD with the sequences similar proteins can be viewed for 2VXD's classification [NPM_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NPM_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2VXD
  • Community annotation for 2VXD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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