2VY4 Splicing date Jul 17, 2008
title U11-48k Chhc Zn-Finger Domain
authors H.Tidow, A.Andreeva, T.J.Rutherford, A.R.Fersht
compound source
Molecule: U11u12 Small Nuclear Ribonucleoprotein 48 Kda Pr
Chain: A
Fragment: Residues 53-87
Synonym: U11u12 Snrnp 48 Kda Protein, U11u12-48k, U11-48k Finger;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_vector: Prset
methodSolution NMR
ligand ZN enzyme
note 2VY4 is a representative structure
Primary referenceSolution structure of the U11-48K CHHC zinc-finger domain that specifically binds the 5' splice site of U12-type introns., Tidow H, Andreeva A, Rutherford TJ, Fersht AR, Structure. 2009 Feb 13;17(2):294-302. PMID:19217400
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (2vy4.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 2VY4
  • CSU: Contacts of Structural Units for 2VY4
  • Original NMR restraints for 2VY4 from PDB
  • Retrieve 2VY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VY4 from S2C, [Save to disk]
  • View 2VY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VY4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VY4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vy4] [2vy4_A]
  • SWISS-PROT database: [Q6IEG0]
  • Domain organization of [SNR48_HUMAN] by SWISSPFAM
  • Other resources with information on 2VY4
  • Community annotation for 2VY4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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