2VYP Rabbit-muscle G-actin in complex with myxobacterial rhizopodin date
authors Hagelueken, G., Albrecht, S.C., Steinmetz, H., Jansen, R., Heinz, D.W., Kalesse, M., Schubert, W.D.
compound source
symmetry
R_factor
R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand ATP, CA, HEZ, RH9 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe absolute configuration of rhizopodin and its inhibition of actin polymerization by dimerization., Hagelueken G, Albrecht SC, Steinmetz H, Jansen R, Heinz DW, Kalesse M, Schubert WD, Angew Chem Int Ed Engl. 2009;48(3):595-8. PMID:19035596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (2vyp.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (2vyp.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 2VYP
  • CSU: Contacts of Structural Units for 2VYP
  • Likely Quarternary Molecular Structure file(s) for 2VYP
  • Structure Factors (445 Kb)
  • Retrieve 2VYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VYP from S2C, [Save to disk]
  • Re-refined 2vyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VYP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VYP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vyp] [2vyp_B] [2vyp_A]
  • SWISS-PROT database: [P68135]
  • Domain organization of [ACTS_RABIT] by SWISSPFAM
  • Domain found in 2VYP: [ACTIN ] by SMART
    • Other resources with information on 2VYP
  • Community annotation for 2VYP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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