2VYT	Transcription	date	Jul 28, 2008
title	The Mbt Repeats Of Human Scml2 Bind To Peptides Containing M Methylated Lysine.
authors	C.M.Santiveri, B.C.Lechtenberg, M.D.Allen, A.Sathyamurthy, A.M.J S.M.V.Freund, M.Bycroft
compound		source
Molecule: Sex Comb On Midleg-Like Protein 2 Chain: A, B Fragment: Mbt Repeats, Residues 24-243 Synonym: Scml2, Human Mbt Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: C41 Expression_system_vector: Modified Prseta
symmetry	Space Group: P 21 21 21	R_factor 0.217 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.530 99.210 131.277 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MLZ, PGE	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	The Malignant brain tumor repeats of human SCML2 bind to peptides containing monomethylated lysine., Santiveri CM, Lechtenberg BC, Allen MD, Sathyamurthy A, Jaulent AM, Freund SM, Bycroft M, J Mol Biol. 2008 Oct 24;382(5):1107-12. Epub 2008 Aug 3. PMID:18706910

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (2vyt.pdb1.gz) 37 Kb Biological Unit Coordinates (2vyt.pdb2.gz) 32 Kb LPC: Ligand-Protein Contacts for 2VYT CSU: Contacts of Structural Units for 2VYT Likely Quarternary Molecular Structure file(s) for 2VYT Structure Factors (295 Kb) Retrieve 2VYT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VYT from S2C, [Save to disk] Re-refined 2vyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VYT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VYT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VYT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vyt_B] [2vyt_A] [2vyt] SWISS-PROT database: [Q9UQR0] Domain organization of [SCML2_HUMAN] by SWISSPFAM Domain found in 2VYT: [MBT ] by SMART

Other resources with information on 2VYT

Community annotation for 2VYT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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