2VZ3 Oxidoreductase date Jul 29, 2008
title Bleached Galactose Oxidase
authors M.S.Rogers, R.Hurtado-Guerrero, S.J.Firbank, M.A.Halcrow, D.M.Dooley, S.E.V.Phillips, P.F.Knowles, M.J.Mcpherson
compound source
Molecule: Galactose Oxidase
Chain: A
Synonym: Gao, Gaoase, Go, Bleached Galactose Oxidase
Ec: 1.1.3.9
Engineered: Yes
Organism_scientific: Gibberella Zeae
Organism_taxid: 5518
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
Expression_system_vector: Ppiczalphab
symmetry Space Group: C 1 2 1
R_factor 0.1685 R_Free 0.2025
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.480 88.090 84.940 90.00 116.67 90.00
method X-Ray Diffractionresolution 1.9 Å
ligand ACT, CU enzyme Oxidoreductase E.C.1.1.3.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCross-link formation of the cysteine 228-tyrosine 272 catalytic cofactor of galactose oxidase does not require dioxygen., Rogers MS, Hurtado-Guerrero R, Firbank SJ, Halcrow MA, Dooley DM, Phillips SE, Knowles PF, McPherson MJ, Biochemistry. 2008 Sep 30;47(39):10428-39. Epub 2008 Sep 5. PMID:18771294
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (2vz3.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 2VZ3
  • CSU: Contacts of Structural Units for 2VZ3
  • Likely Quarternary Molecular Structure file(s) for 2VZ3
  • Structure Factors (369 Kb)
  • Retrieve 2VZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VZ3 from S2C, [Save to disk]
  • Re-refined 2vz3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VZ3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VZ3, from MSDmotif at EBI
  • Fold representative 2vz3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vz3] [2vz3_A]
  • SWISS-PROT database: [Q01745]
  • Domain organization of [GAOA_GIBZE] by SWISSPFAM
  • Domains found in 2VZ3: [FA58C] [Kelch ] by SMART
  • Other resources with information on 2VZ3
  • Community annotation for 2VZ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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