2VZC	Cell Adhesion	date	Jul 31, 2008
title	Crystal Structure Of The C-Terminal Calponin Homology Domain Parvin
authors	S.Lorenz, I.Vakonakis, E.D.Lowe, I.D.Campbell, M.E.M.Noble, M.K.H
compound		source
Molecule: Alpha-Parvin Chain: A, B Fragment: C-Terminal Calponin Homology Domain, Residues 242 Synonym: Calponin-Like Integrin-Linked Kinase-Binding Prote Ilkbp, Matrix-Remodeling-Associated Protein 2, Actopaxin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pgex-6p1
symmetry	Space Group: P 1 21 1	R_factor 0.143 R_Free 0.159
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.144 71.197 47.146 90.00 99.88 90.00
method	X-Ray Diffraction	resolution	1.05 Å
ligand	GOL, MPD, MRD, TRS	enzyme
note	2VZC is a representative structure
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural analysis of the interactions between paxillin LD motifs and alpha-parvin., Lorenz S, Vakonakis I, Lowe ED, Campbell ID, Noble ME, Hoellerer MK, Structure. 2008 Oct 8;16(10):1521-31. PMID:18940607

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk] Biological Unit Coordinates (2vzc.pdb1.gz) 59 Kb Biological Unit Coordinates (2vzc.pdb2.gz) 63 Kb LPC: Ligand-Protein Contacts for 2VZC CSU: Contacts of Structural Units for 2VZC Likely Quarternary Molecular Structure file(s) for 2VZC Structure Factors (840 Kb) Retrieve 2VZC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VZC from S2C, [Save to disk] Re-refined 2vzc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VZC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VZC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VZC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vzc_B] [2vzc_A] [2vzc] SWISS-PROT database: [Q9NVD7] Domain organization of [PARVA_HUMAN] by SWISSPFAM Domain found in 2VZC: [CH ] by SMART

Other resources with information on 2VZC

Community annotation for 2VZC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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