2VZC Cell Adhesion date Jul 31, 2008
title Crystal Structure Of The C-Terminal Calponin Homology Domain Of Alpha Parvin
authors S.Lorenz, I.Vakonakis, E.D.Lowe, I.D.Campbell, M.E.M.Noble, M.K.Hoellerer
compound source
Molecule: Alpha-Parvin
Chain: A, B
Fragment: C-Terminal Calponin Homology Domain, Residues 242-372;
Synonym: Calponin-Like Integrin-Linked Kinase-Binding Protein, Ch-Ilkbp, Matrix-Remodeling-Associated Protein 2, Actopaxin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-6p1
symmetry Space Group: P 1 21 1
R_factor 0.143 R_Free 0.159
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.144 71.197 47.146 90.00 99.88 90.00
method X-Ray Diffractionresolution 1.05 Å
ligand GOL, MPD, MRD, TRS enzyme
note 2VZC is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural analysis of the interactions between paxillin LD motifs and alpha-parvin., Lorenz S, Vakonakis I, Lowe ED, Campbell ID, Noble ME, Hoellerer MK, Structure. 2008 Oct 8;16(10):1521-31. PMID:18940607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (2vzc.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (2vzc.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2VZC
  • CSU: Contacts of Structural Units for 2VZC
  • Likely Quarternary Molecular Structure file(s) for 2VZC
  • Structure Factors (840 Kb)
  • Retrieve 2VZC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VZC from S2C, [Save to disk]
  • Re-refined 2vzc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VZC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VZC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VZC, from MSDmotif at EBI
  • Fold representative 2vzc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vzc_B] [2vzc_A] [2vzc]
  • SWISS-PROT database: [Q9NVD7]
  • Domain organization of [PARVA_HUMAN] by SWISSPFAM
  • Domain found in 2VZC: [CH ] by SMART
  • Other resources with information on 2VZC
  • Community annotation for 2VZC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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