2VZE Ligase date Jul 31, 2008
title Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Member 2a (L64p Mutation) In Complex With Amp
authors W.W.Yue, G.T.Kochan, E.S.Pilka, C.Bhatia, F.Von Delft, C.H.Arrows A.M.Edwards, M.Wikstrom, C.Bountra, U.Oppermann
compound source
Molecule: Acyl-Coenzyme A Synthetase Acsm2a, Mitochondrial
Chain: A, B, C
Fragment: Residues 32-577
Synonym: Acyl-Coa Synthetase Medium-Chain Family Member 2a, Chain Acyl-Coa Synthetase 2a, Butyryl Coenzyme A Synthetase Butyrate--Coa Ligase 2a;
Ec: 6.2.1.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Mitochondria
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: P 41 21 2
R_factor 0.193 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.730 97.730 384.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand AMP, MG enzyme Ligase E.C.6.2.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural Snapshots for the Conformation-dependent Catalysis by Human Medium-chain Acyl-coenzyme A Synthetase ACSM2A., Kochan G, Pilka ES, von Delft F, Oppermann U, Yue WW, J Mol Biol. 2009 Apr 1. PMID:19345228
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (236 Kb) [Save to disk]
  • Biological Unit Coordinates (2vze.pdb1.gz) 79 Kb
  • Biological Unit Coordinates (2vze.pdb2.gz) 78 Kb
  • Biological Unit Coordinates (2vze.pdb3.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 2VZE
  • CSU: Contacts of Structural Units for 2VZE
  • Likely Quarternary Molecular Structure file(s) for 2VZE
  • Structure Factors (989 Kb)
  • Retrieve 2VZE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VZE from S2C, [Save to disk]
  • Re-refined 2vze structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VZE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VZE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VZE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vze_A] [2vze] [2vze_C] [2vze_B]
  • SWISS-PROT database: [Q08AH3]
  • Domain organization of [ACS2A_HUMAN] by SWISSPFAM
  • Other resources with information on 2VZE
  • Community annotation for 2VZE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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