2W0P Cell Adhesion date Aug 20, 2008
title Crystal Structure Of The Filamin A Repeat 21 Complexed With The Migfilin Peptide
authors S.Ruskamo, J.Ylanne
compound source
Molecule: Filamin-A
Chain: A, B
Fragment: Ig-21, Residues 2236-2329
Synonym: Alpha-Filamin, Filamin-1, Endothelial Actin-Binding Protein, Actin-Binding Protein 280, Abp-280, Nonmuscle Filamin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-4t-3

Molecule: Filamin-Binding Lim Protein 1
Chain: C
Fragment: Residues 5-19
Synonym: Mitogen-Inducible 2-Interacting Protein, Migfilin

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.890 68.480 85.220 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SO4 enzyme
note 2W0P is a representative structure
Primary referenceStructural Basis of the Migfilin-Filamin Interaction and Competition with Integrin {beta} Tails., Lad Y, Jiang P, Ruskamo S, Harburger DS, Ylanne J, Campbell ID, Calderwood DA, J Biol Chem. 2008 Dec 12;283(50):35154-63. Epub 2008 Sep 30. PMID:18829455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (2w0p.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 2W0P
  • CSU: Contacts of Structural Units for 2W0P
  • Likely Quarternary Molecular Structure file(s) for 2W0P
  • Structure Factors (229 Kb)
  • Retrieve 2W0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W0P from S2C, [Save to disk]
  • Re-refined 2w0p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W0P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W0P, from MSDmotif at EBI
  • Fold representative 2w0p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w0p] [2w0p_A] [2w0p_B] [2w0p_C]
  • SWISS-PROT database: [Q8WUP2] [P21333]
  • Belongs to the dystrophin (dystrophin) family according to TCDB.
  • Domain organization of [FBLI1_HUMAN] [FLNA_HUMAN] by SWISSPFAM
  • Domain found in 2W0P: [IG_FLMN ] by SMART
  • Other resources with information on 2W0P
  • Community annotation for 2W0P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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