2W1D Transferase date Oct 17, 2008
title Structure Determination Of Aurora Kinase In Complex With Inhibitor
authors S.Howard, V.Berdini, J.A.Boulstridge, M.G.Carr, D.M.Cross, J.Curry, L.A.Devine, T.R.Early, L.Fazal, A.L.Gill, M.Heathcote, S.Maman, J.E.Matthews, R.L.Mcmenamin, E.F.Navarro, M.A.O'Brien, M.O'Reilly, D.C.Rees, M.Reule, D.Tisi, G.Williams, M.Vinkovic, P.G.Wyatt
compound source
Molecule: Serinethreonine-Protein Kinase 6
Chain: A
Fragment: Kinase Domain, Residues 122-389
Synonym: Aurora Kinase A, Serinethreonine Kinase 15, Auroraipl1-Related Kinase 1, Breast Tumor-Amplified Kinase, Aurora A, Aurora-A, Aurora-Related Kinase 1, Hark1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet 23a
symmetry Space Group: P 61 2 2
R_factor 0.236 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.008 83.008 169.719 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.97 Å
ligand L0D BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment-based discovery of the pyrazol-4-yl urea (AT9283), a multitargeted kinase inhibitor with potent aurora kinase activity., Howard S, Berdini V, Boulstridge JA, Carr MG, Cross DM, Curry J, Devine LA, Early TR, Fazal L, Gill AL, Heathcote M, Maman S, Matthews JE, McMenamin RL, Navarro EF, O'Brien MA, O'Reilly M, Rees DC, Reule M, Tisi D, Williams G, Vinkovic M, Wyatt PG, J Med Chem. 2009 Jan 22;52(2):379-88. PMID:19143567
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2w1d.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2W1D
  • CSU: Contacts of Structural Units for 2W1D
  • Likely Quarternary Molecular Structure file(s) for 2W1D
  • Structure Factors (124 Kb)
  • Retrieve 2W1D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W1D from S2C, [Save to disk]
  • Re-refined 2w1d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W1D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W1D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W1D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w1d] [2w1d_A]
  • SWISS-PROT database: [O14965]
  • Domain organization of [STK6_HUMAN] by SWISSPFAM
  • Domain found in 2W1D: [S_TKc ] by SMART
  • Other resources with information on 2W1D
  • Community annotation for 2W1D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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