2W2I	Oxidoreductase	date	Oct 31, 2008
title	Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc3
authors	W.W.Yue, S.Ng, N.Shafqat, E.Ugochukwu, M.Mcdonough, A.C.W.Pike, P.Filippakopoulos, F.Von Delft, C.Arrowsmith, J.Weigelt, A.Edwa C.Bountra, C.Schofield, U.Oppermann
compound		source
Molecule: 2-Oxoglutarate Oxygenase Chain: A, B, C Fragment: Residues 1-336 Synonym: Uncharacterized Protein Loc390245 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: R3-Prare2 Expression_system_vector: Pnic28-Bsa4
symmetry	Space Group: I 2 2 2	R_factor 0.210 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.904 111.009 224.199 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	GOL, NI, PD2 BindingDB	enzyme
Primary reference	Structural and evolutionary basis for the dual substrate selectivity of human KDM4 histone demethylase family., Hillringhaus L, Yue WW, Rose NR, Ng SS, Gileadi C, Loenarz C, Bello SH, Bray JE, Schofield CJ, Oppermann U, J Biol Chem. 2011 Dec 2;286(48):41616-25. Epub 2011 Sep 13. PMID:21914792

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk] Biological Unit Coordinates (2w2i.pdb1.gz) 53 Kb Biological Unit Coordinates (2w2i.pdb2.gz) 54 Kb Biological Unit Coordinates (2w2i.pdb3.gz) 55 Kb LPC: Ligand-Protein Contacts for 2W2I CSU: Contacts of Structural Units for 2W2I Likely Quarternary Molecular Structure file(s) for 2W2I Structure Factors (507 Kb) Retrieve 2W2I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2W2I from S2C, [Save to disk] Re-refined 2w2i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2W2I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2W2I

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2W2I, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2w2i_A] [2w2i_C] [2w2i_B] [2w2i] SWISS-PROT database: [B2RXH2] Domain organization of [B2RXH2_HUMAN] by SWISSPFAM Domains found in 2W2I: [JmjC] [JmjN ] by SMART

Other resources with information on 2W2I

Community annotation for 2W2I at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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