2W3L Apoptosis date Nov 13, 2008
title Crystal Structure Of Chimaeric Bcl2-Xl And Phenyl Tetrahydroisoquinoline Amide Complex
authors J.Porter, A.Payne, B.De Candole, D.Ford, B.Hutchinson, G.Trevitt, J.Turner, C.Edwards, C.Watkins, I.Whitcombe, J.Davis, C.Stubberfield, M.Fisher, M.Lamers
compound source
Molecule: Apoptosis Regulator Bcl-2
Chain: A, B
Fragment: Residues 9-33,92-206
Synonym: Bcl2-Xl
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.000 68.320 70.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand DRO enzyme
Primary referenceTetrahydroisoquinoline amide substituted phenyl pyrazoles as selective Bcl-2 inhibitors., Porter J, Payne A, de Candole B, Ford D, Hutchinson B, Trevitt G, Turner J, Edwards C, Watkins C, Whitcombe I, Davis J, Stubberfield C, Bioorg Med Chem Lett. 2008 Oct 31. PMID:19027294
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2w3l.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (2w3l.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 2W3L
  • CSU: Contacts of Structural Units for 2W3L
  • Likely Quarternary Molecular Structure file(s) for 2W3L
  • Structure Factors (259 Kb)
  • Retrieve 2W3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W3L from S2C, [Save to disk]
  • Re-refined 2w3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W3L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W3L, from MSDmotif at EBI
  • Fold representative 2w3l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w3l_B] [2w3l] [2w3l_A]
  • SWISS-PROT database: [P10415]
  • Domain organization of [BCL2_HUMAN] by SWISSPFAM
  • Domains found in 2W3L: [BCL] [BH4 ] by SMART
  • Alignments of the sequence of 2W3L with the sequences similar proteins can be viewed for 2W3L's classification [BCL2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [BCL2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2W3L
  • Community annotation for 2W3L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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