2W4F	Structural Protein	date	Nov 25, 2008
title	Crystal Structure Of The First Pdz Domain Of Human Scrib1
authors	V.Hozjan, E.S.Pilka, A.K.Roos, W.W Yue, C.Phillips, J.Bray, C.Cooper, E.Salah, J.M.Elkins, J.R.C.Muniz, C.H.Arrowsmith, J.Weigelt, A.M.Edwards, F.Von Delft, C.Bountra, D.A.Doyle, U.Oppermann
compound		source
Molecule: Protein Lap4 Chain: A Fragment: Residues 725-815 Synonym: Pdz Domain Of Scrib1 Variant N1, Protein Scribble Homolog, Hscrib; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: R3-Prare2 Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 21 21 21	R_factor 0.173 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.216 41.829 49.897 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.30 Å
ligand	EDO	enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk] Biological Unit Coordinates (2w4f.pdb1.gz) 34 Kb LPC: Ligand-Protein Contacts for 2W4F CSU: Contacts of Structural Units for 2W4F Likely Quarternary Molecular Structure file(s) for 2W4F Structure Factors (246 Kb) Retrieve 2W4F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2W4F from S2C, [Save to disk] Re-refined 2w4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2W4F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2W4F

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2W4F, from MSDmotif at EBI Fold representative 2w4f from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2w4f_A] SWISS-PROT database: [Q14160] Domain organization of [SCRIB_HUMAN] by SWISSPFAM Domain found in 2W4F: [PDZ ] by SMART Alignments of the sequence of 2W4F with the sequences similar proteins can be viewed for 2W4F's classification [SCRIB_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [SCRIB_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2W4F

Community annotation for 2W4F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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