2W4L	Hydrolase	date	Nov 28, 2008
title	Human Dcmp Deaminase
authors	M.I.Siponen, M.Moche, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Co L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, L.Lehtio, M.E T.Nyman, C.Persson, J.Sagemark, H.Schuler, A.G.Thorsell, L.Tresa S.Van Den Berg, J.Weigelt, M.Welin, M.Wikstrom, M.Wisniewska, P.
compound		source
Molecule: Deoxycytidylate Deaminase Chain: A, B, C, D, E, F Fragment: 5-173 Synonym: Dcmp Deaminse Ec: 3.5.4.12 Engineered: Yes Other_details: Construct Has C-Terminal Histag		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) R3 Prare Expression_system_plasmid: Pnic-Ch2 Other_details: Mgc
symmetry	Space Group: P 1 21 1	R_factor 0.200 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.230 80.070 96.240 90.00 94.34 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CL, ZN	enzyme	Hydrolase E.C.3.5.4.12 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk] Biological Unit Coordinates (2w4l.pdb1.gz) 149 Kb LPC: Ligand-Protein Contacts for 2W4L CSU: Contacts of Structural Units for 2W4L Likely Quarternary Molecular Structure file(s) for 2W4L Structure Factors (791 Kb) Retrieve 2W4L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2W4L from S2C, [Save to disk] Re-refined 2w4l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2W4L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2W4L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2W4L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2w4l_B] [2w4l_A] [2w4l_C] [2w4l_E] [2w4l_D] [2w4l] [2w4l_F] SWISS-PROT database: [P32321] Domain organization of [DCTD_HUMAN] by SWISSPFAM

Other resources with information on 2W4L

Community annotation for 2W4L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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