2W50 Hormone date Dec 03, 2008
title N-Terminal Domain Of Human Conserved Dopamine Neurotrophic F (Cdnf)
authors V.Parkash, P.Lindholm, J.Peranen, N.Kalkkinen, E.Oksanen, M.Saarm V.M.Leppanen, A.Goldman
compound source
Molecule: Armet-Like Protein 1
Chain: A, B
Fragment: N-Terminal Domain, Residues 32-133
Synonym: Conserved Dopamine Neurotrophic Factor, Cdnf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.300 42.040 51.990 90.00 97.67 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand PO4 enzyme
Primary referenceThe structure of the conserved neurotrophic factors MANF and CDNF explains why they are bifunctional., Parkash V, Lindholm P, Peranen J, Kalkkinen N, Oksanen E, Saarma M, Leppanen VM, Goldman A, Protein Eng Des Sel. 2009 Mar 3. PMID:19258449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2w50.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (2w50.pdb2.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 2W50
  • CSU: Contacts of Structural Units for 2W50
  • Likely Quarternary Molecular Structure file(s) for 2W50
  • Structure Factors (351 Kb)
  • Retrieve 2W50 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W50 from S2C, [Save to disk]
  • Re-refined 2w50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W50 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W50
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W50, from MSDmotif at EBI
  • Fold representative 2w50 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w50_B] [2w50_A] [2w50]
  • SWISS-PROT database: [Q49AH0]
  • Domain organization of [CDNF_HUMAN] by SWISSPFAM
  • Other resources with information on 2W50
  • Community annotation for 2W50 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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