2W5H Transferase date Dec 10, 2008
title Human Nek2 Kinase Apo
authors R.Bayliss
compound source
Molecule: Serinethreonine-Protein Kinase Nek2
Chain: A
Fragment: Kinase Domain, Residues 1-271
Synonym: Nima-Related Protein Kinase 2, Nima-Like Protein Kinase 1, Hspk 21, Nek2;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet22b
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.739 56.962 80.612 90.00 133.36 90.00
method X-Ray Diffractionresolution 2.33 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights into the Conformational Variability and Regulation of Human Nek2 Kinase., Westwood I, Cheary DM, Baxter JE, Richards MW, van Montfort RL, Fry AM, Bayliss R, J Mol Biol. 2008 Dec 24. PMID:19124027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (2w5h.pdb1.gz) 92 Kb
  • CSU: Contacts of Structural Units for 2W5H
  • Likely Quarternary Molecular Structure file(s) for 2W5H
  • Structure Factors (292 Kb)
  • Retrieve 2W5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W5H from S2C, [Save to disk]
  • Re-refined 2w5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W5H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W5H, from MSDmotif at EBI
  • Fold representative 2w5h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w5h_A] [2w5h]
  • SWISS-PROT database: [P51955]
  • Domain organization of [NEK2_HUMAN] by SWISSPFAM
  • Domain found in 2W5H: [S_TKc ] by SMART
  • Other resources with information on 2W5H
  • Community annotation for 2W5H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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