2W9L Receptor date Jan 26, 2009
title Canine Adenovirus Type 2 Fibre Head In Complex With Car Doma Sialic Acid
authors E.Seiradake, D.Henaff, H.Wodrich, O.Billet, M.Perreau, C.Hippert, F.Mennechet, G.Schoehn, H.Lortat-Jacob, H.Dreja, S.Ibanes, V.Kal J.P.Wang, R.W.Finberg, S.Cusack, E.J.Kremer
compound source
Molecule: Coxsackievirus And Adenovirus Receptor
Chain: A, B, G, J, K, O, P, T, V, X, Y, Z
Fragment: Domain D1, Residues 16-139
Synonym: Coxsackievirus B-Adenovirus Receptor, Hcvadr, Hcar Binding Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Xl1 Blue

Molecule: Fibre Protein
Chain: C, D, E, F, H, I, L, M, N, Q, R, S
Fragment: Fibre Head, Residues 358-542
Synonym: Canine Adenovirus Fibre Head, Piv
Engineered: Yes

Organism_scientific: Canine Adenovirus 2
Organism_taxid: 10514
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Star
symmetry Space Group: I 4 2 2
R_factor 0.197 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
221.150 221.150 391.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.91 Å
ligand GAL, GL0, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, N, E, H, Q, M, C, D, R, I, L


Primary referenceThe cell adhesion molecule "CAR" and sialic acid on human erythrocytes influence adenovirus in vivo biodistribution., Seiradake E, Henaff D, Wodrich H, Billet O, Perreau M, Hippert C, Mennechet F, Schoehn G, Lortat-Jacob H, Dreja H, Ibanes S, Kalatzis V, Wang JP, Finberg RW, Cusack S, Kremer EJ, PLoS Pathog. 2009 Jan;5(1):e1000277. Epub 2009 Jan 2. PMID:19119424
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (563 Kb) [Save to disk]
  • Biological Unit Coordinates (2w9l.pdb1.gz) 143 Kb
  • Biological Unit Coordinates (2w9l.pdb2.gz) 143 Kb
  • Biological Unit Coordinates (2w9l.pdb3.gz) 144 Kb
  • Biological Unit Coordinates (2w9l.pdb4.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 2W9L
  • CSU: Contacts of Structural Units for 2W9L
  • Likely Quarternary Molecular Structure file(s) for 2W9L
  • Structure Factors (911 Kb)
  • Retrieve 2W9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W9L from S2C, [Save to disk]
  • Re-refined 2w9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W9L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W9L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w9l_B] [2w9l_D] [2w9l_Z] [2w9l_X] [2w9l_E] [2w9l_F] [2w9l_C] [2w9l_O] [2w9l_R] [2w9l_T] [2w9l] [2w9l_Q] [2w9l_S] [2w9l_L] [2w9l_Y] [2w9l_M] [2w9l_P] [2w9l_K] [2w9l_H] [2w9l_V] [2w9l_N] [2w9l_A] [2w9l_J] [2w9l_G] [2w9l_I]
  • SWISS-PROT database: [P78310] [Q65914]
  • Domain organization of [CXAR_HUMAN] [FIBP_ADECT] by SWISSPFAM
  • Domain found in 2W9L: [IG ] by SMART
  • Other resources with information on 2W9L
  • Community annotation for 2W9L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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