2WA4 Oxidoreductase date Feb 02, 2009
title Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
authors A.Conejo-Garcia, B.M.R.Lienard, I.J.Clifton, M.A.Mcdonough, C.J.
compound source
Molecule: Hypoxia-Inducible Factor 1-Alpha Inhibitor
Chain: A
Synonym: Factor Inhibiting Hif1, Hypoxia-Inducible Factor A Hydroxylase, Factor Inhibiting Hif-1, Fih-1;
Ec: 1.14.11.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28a
symmetry Space Group: P 41 21 2
R_factor 0.211 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.115 87.115 150.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 069, FE2, SO4 enzyme Oxidoreductase E.C.1.14.11.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for binding of cyclic 2-oxoglutarate analogues to factor-inhibiting hypoxia-inducible factor., Conejo-Garcia A, McDonough MA, Loenarz C, McNeill LA, Hewitson KS, Ge W, Lienard BM, Schofield CJ, Clifton IJ, Bioorg Med Chem Lett. 2010 Oct 15;20(20):6125-8. Epub 2010 Aug 10. PMID:20822901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (2wa4.pdb1.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 2WA4
  • CSU: Contacts of Structural Units for 2WA4
  • Structure Factors (145 Kb)
  • Retrieve 2WA4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WA4 from S2C, [Save to disk]
  • Re-refined 2wa4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WA4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WA4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WA4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m2wa4, region A:1-286 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wa4] [2wa4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2WA4: [JmjC ] by SMART
  • Other resources with information on 2WA4
  • Community annotation for 2WA4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science