2WBY Hydrolase Hormone date Mar 06, 2009
title Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin
authors M.Manolopoulou, Q.Guo, E.Malito, A.B.Schilling, W.J.Tang
compound source
Molecule: Insulin-Degrading Enzyme
Chain: A, B
Fragment: Residues 42-1019
Synonym: Insulin Protease, Insulysin, Insulinase
Ec: 3.4.24.56
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Pubs520

Molecule: Insulin A Chain
Chain: C, E
Fragment: Residues 90-109

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Insulin B Chain
Chain: D, F
Fragment: Residues 25-43

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 65
R_factor 0.164 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
262.319 262.319 90.609 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand ZN enzyme Hydrolase E.C.3.4.24.56 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C, E


F, D


Primary referenceMolecular basis of catalytic chamber-assisted unfolding and cleavage of human insulin by human insulin degrading enzyme., Manolopoulou M, Guo Q, Malito E, Schilling AB, Tang WJ, J Biol Chem. 2009 Mar 25. PMID:19321446
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (349 Kb) [Save to disk]
  • Biological Unit Coordinates (2wby.pdb1.gz) 174 Kb
  • Biological Unit Coordinates (2wby.pdb2.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 2WBY
  • CSU: Contacts of Structural Units for 2WBY
  • Likely Quarternary Molecular Structure file(s) for 2WBY
  • Structure Factors (1575 Kb)
  • Retrieve 2WBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WBY from S2C, [Save to disk]
  • Re-refined 2wby structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WBY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WBY, from MSDmotif at EBI
  • Fold representative 2wby from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wby_E] [2wby_B] [2wby] [2wby_A] [2wby_F] [2wby_C] [2wby_D]
  • SWISS-PROT database: [P14735] [P01308]
  • Domain organization of [IDE_HUMAN] [INS_HUMAN] by SWISSPFAM
  • Other resources with information on 2WBY
  • Community annotation for 2WBY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science