2WBZ Plant Protein date Mar 06, 2009
title 1.6 A Structure Of Thaumatin Crystallized Without Tartrate A
authors J.Jakoncic, N.Asherie, C.Ginsberg
compound source
Molecule: Thaumatin I
Chain: A
Fragment: Residues 1-206
Synonym: Thaumatin-1
 Organism_scientific: Thaumatococcus Daniellii
Organism_common: Katemfe
Organism_taxid: 4621
Other_details: From Aril Covering Seeds
symmetry Space Group: P 41 21 2
R_factor 0.156 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.195 58.195 150.622 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2wbz.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 2WBZ
  • Structure Factors (249 Kb)
  • Retrieve 2WBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WBZ from S2C, [Save to disk]
  • Re-refined 2wbz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2WBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WBZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WBZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wbz] [2wbz_A]
  • SWISS-PROT database: [P02883]
  • Domain organization of [THM1_THADA] by SWISSPFAM
  • Domain found in 2WBZ: [THN ] by SMART
    • Other resources with information on 2WBZ
  • Community annotation for 2WBZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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