2WCC Protein Dna date Mar 11, 2009
title Phage Lambda Intdbd1-64 Complex With P Prime 2 Dna
authors E.A.Fadeev, M.D.Sam, R.T.Clubb
compound source
Molecule: Dna (5'-D(Dcpdgpdapdgpdtpdcpdap Dapdapdapdtpdc)-3');
Chain: 1
Other_details: Intn(1-64) Complex With 12 Mer Double Stranded P'2 Dna;
 Synthetic: Yes
Organism_scientific: Enterobacteria Phage Lambda
Organism_common: Phage Lambda
Organism_taxid: 10710

Molecule: Dna (5'-D(Dgpdapdtpdtpdtpdtpdgp Dapdcpdtpdgpdc)-3');
Chain: 2
Other_details: Intn(1-64) Complex With 12 Mer Double Stranded P'2 Dna;
Synthetic: Yes
Organism_scientific: Enterobacteria Phage Lambda
Organism_common: Phage Lambda
Organism_taxid: 10710

Molecule: Integrase
Chain: 3
Fragment: P'2 Dna Binding Domain, Residues 1-64
Synonym: Phage Lambda Intn-Dna Complex
Engineered: Yes
Other_details: Intn(1-64) Complex With 12 Mer Double Stranded P'2 Dna
Organism_scientific: Enterobacteria Phage Lambda
Organism_common: Phage Lambda
Organism_taxid: 10710
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
methodSolution NMR
note 2WCC is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
3


Primary referenceNMR Structure of the Amino-Terminal Domain of the Lambda Integrase Protein in Complex with DNA: Immobilization of a Flexible Tail Facilitates Beta-Sheet Recognition of the Major Groove., Fadeev EA, Sam MD, Clubb RT, J Mol Biol. 2009 Mar 24. PMID:19324050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (622 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2WCC
  • Original NMR restraints for 2WCC from PDB
  • Retrieve 2WCC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WCC from S2C, [Save to disk]
    • View 2WCC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WCC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WCC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wcc_1] [2wcc_2] [2wcc_3] [2wcc]
  • SWISS-PROT database: [P03700]
  • Domain organization of [VINT_LAMBD] by SWISSPFAM
    • Other resources with information on 2WCC
  • Community annotation for 2WCC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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