2WCG Hydrolase date Mar 12, 2009
title X-Ray Structure Of Acid-Beta-Glucosidase With N-Octyl( Cyclic Guanidine)-Nojirimycin In The Active Site
authors B.Brumshtein, M.Aguilar, M.I.Garcia-Moreno, C.O.Mellet, J.M.Garcia-Fernandez, I.Silman, Y.Shaaltiel, D.Aviezer, J.L.Sussman, A.H.Futerman
compound source
Molecule: Glucosylceramidase
Chain: A, B
Fragment: Residues 40-536
Ec: 3.2.1.45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Daucus Carota
Expression_system_taxid: 4039
symmetry Space Group: P 1 21 1
R_factor 0.135 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.311 96.827 83.234 90.00 104.34 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, FU4, MAN, MT5, NAG, SO4 enzyme Hydrolase E.C.3.2.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary reference6-Amino-6-deoxy-5,6-di-N-(N'-octyliminomethylidene)nojirimycin: synthesis, biological evaluation, and crystal structure in complex with acid beta-glucosidase., Brumshtein B, Aguilar-Moncayo M, Garcia-Moreno MI, Ortiz Mellet C, Garcia Fernandez JM, Silman I, Shaaltiel Y, Aviezer D, Sussman JL, Futerman AH, Chembiochem. 2009 Jun 15;10(9):1480-5. PMID:19437524
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (2wcg.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (2wcg.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 2WCG
  • CSU: Contacts of Structural Units for 2WCG
  • Structure Factors (642 Kb)
  • Retrieve 2WCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WCG from S2C, [Save to disk]
  • Re-refined 2wcg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WCG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WCG, from MSDmotif at EBI
  • Fold representative 2wcg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wcg_A] [2wcg] [2wcg_B]
  • SWISS-PROT database: [P04062]
  • Domain organization of [GLCM_HUMAN] by SWISSPFAM
  • Other resources with information on 2WCG
  • Community annotation for 2WCG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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