2WDP Hydrolase date Mar 25, 2009
title Crystal Structure Of Ligand Free Human Caspase-6
authors R.Baumgartner, C.Briand, G.Meder, R.Morse, M.Renatus
compound source
Molecule: Caspase-6
Chain: A, B, C, D
Synonym: Apoptotic Protease Mch-2, Casp-6
Ec: 3.4.22.59
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.146 90.441 86.397 90.00 92.77 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand PO4 enzyme Hydrolase E.C.3.4.22.59 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe crystal structure of caspase-6, a selective effector of axonal degeneration., Baumgartner R, Meder G, Briand C, Decock A, D'arcy A, Hassiepen U, Morse R, Renatus M, Biochem J. 2009 Oct 12;423(3):429-39. PMID:19694615
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (313 Kb) [Save to disk]
  • Biological Unit Coordinates (2wdp.pdb1.gz) 152 Kb
  • Biological Unit Coordinates (2wdp.pdb2.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 2WDP
  • CSU: Contacts of Structural Units for 2WDP
  • Structure Factors (517 Kb)
  • Retrieve 2WDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WDP from S2C, [Save to disk]
  • Re-refined 2wdp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WDP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WDP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wdp_B] [2wdp_A] [2wdp] [2wdp_D] [2wdp_C]
  • SWISS-PROT database: [P55212]
  • Domain organization of [CASP6_HUMAN] by SWISSPFAM
  • Domain found in 2WDP: [CASc ] by SMART
  • Other resources with information on 2WDP
  • Community annotation for 2WDP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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