2WEC Hydrolase date Feb 03, 1998
title Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex Wi Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-Naphthaleneace Valyl)Aminomethyl)Hydroxy Phosphinyloxy]-3-Phenylpropanoate Salt
authors J.Ding, M.E.Fraser, M.N.G.James
compound source
Molecule: Penicillopepsin
Chain: A
Ec: 3.4.23.20
Organism_scientific: Penicillium Janthinellum
Organism_taxid: 5079
symmetry Space Group: C 1 2 1
R_factor 0.141 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.240 46.630 65.870 90.00 115.94 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MAN, PP5, SO4 enzyme Hydrolase E.C.3.4.23.20 BRENDA
note 2WEC supersedes 1WEC
related structures by homologous chain: 1BXQ, 2WEB
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2wec.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 2WEC
  • CSU: Contacts of Structural Units for 2WEC
  • Likely Quarternary Molecular Structure file(s) for 2WEC
  • Retrieve 2WEC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WEC from S2C, [Save to disk]
  • View 2WEC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WEC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 2WEC from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WEC, from MSDmotif at EBI
  • Genome occurence of 2WEC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2wec__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wec] [2wec_A]
  • SWISS-PROT database: [P00798]
  • Domain organization of [PENP_PENJA] by SWISSPFAM
  • Other resources with information on 2WEC
  • Community annotation for 2WEC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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