2WEF Hydrolase date Mar 30, 2009
title Human 3'(2'), 5'-Bisphosphate Nucleotidase 1 (Bpnt1) In Complex With Amp, Po4 And Magnesium
authors M.Moche, P.Schutz, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Collins, L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, M.E.Nilsson, T.Nyman, C.Persson, J.Sagemark, H.Schueler, M.I.Siponen, A.G.Thorsell, L.Tresaugues, S.Van Der Berg, J.Weigelt, M.Welin, M.Wisniewska, P.Nordlund, Structural Genomics Consortium (Sgc)
compound source
Molecule: 3'(2')\, 5'-Bisphosphate Nucleotidase 1
Chain: A
Fragment: Residues 6-308
Synonym: Bisphosphate 3'-Nucleotidase 1, Pap-Inositol-1\,4-Phosphatase, Bpntase 1, Pip;
Engineered: Yes
Other_details: C-Terminal Hexahistidine Tag
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_plasmid: Pnic-Ch2
Other_details: Mgc
symmetry Space Group: P 2 21 21
R_factor 0.144 R_Free 0.189
length a length b length c angle alpha angle beta angle gamma
38.980 67.664 100.394 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand AMP, MG, PO4 enzyme Hydrolase E.C. BRENDA
  • 3'(2'),5'-bisphosphate nucle...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2wef.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2WEF
  • CSU: Contacts of Structural Units for 2WEF
  • Likely Quarternary Molecular Structure file(s) for 2WEF
  • Structure Factors (333 Kb)
  • Retrieve 2WEF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WEF from S2C, [Save to disk]
  • Re-refined 2wef structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WEF in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WEF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WEF, from MSDmotif at EBI
  • Fold representative 2wef from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wef] [2wef_A]
  • SWISS-PROT database: [O95861]
  • Domain organization of [BPNT1_HUMAN] by SWISSPFAM
  • Other resources with information on 2WEF
  • Community annotation for 2WEF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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