2WEL Transferase date Mar 31, 2009
title Crystal Structure Of Su6656-Bound Calciumcalmodulin-Depende Kinase II Delta In Complex With Calmodulin
authors A.C.W.Pike, P.Rellos, E.Salah, N.Burgess-Brown, T.Keates, J.Muniz A.Roos, P.Filippakopoulos, F.Von Delft, A.Edwards, J.Weigelt, C.H.Arrowsmith, C.Bountra, S.Knapp
compound source
Molecule: Calciumcalmodulin-Dependent Protein Kinase Type Chain;
Chain: A
Fragment: Kinase Domain, Residues 11-335
Synonym: Calcium Calmodulin-Dependent Protein Kinase Type I Cam-Kinase II Delta Chain, Cam Kinase II Subunit Delta, Cam Subunit Delta;
Ec: 2.7.11.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Calmodulin
Chain: D
Synonym: Cam
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.260 68.850 121.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, EDO, K88, PO4 enzyme Transferase E.C.2.7.11.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


D


Primary referenceStructure of the CaMKIIdelta/calmodulin complex reveals the molecular mechanism of CaMKII kinase activation., Rellos P, Pike AC, Niesen FH, Salah E, Lee WH, von Delft F, Knapp S, PLoS Biol. 2010 Jul 27;8(7):e1000426. PMID:20668654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (2wel.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 2WEL
  • CSU: Contacts of Structural Units for 2WEL
  • Likely Quarternary Molecular Structure file(s) for 2WEL
  • Structure Factors (688 Kb)
  • Retrieve 2WEL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WEL from S2C, [Save to disk]
  • Re-refined 2wel structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WEL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WEL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WEL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wel_D] [2wel_A] [2wel]
  • SWISS-PROT database: [P62158] [Q13557]
  • Belongs to the calmodulin calcium binding protein (calmodulin) family according to TCDB.
  • Domain organization of [CALM_HUMAN] [KCC2D_HUMAN] by SWISSPFAM
  • Domains found in 2WEL: [EFh] [S_TKc ] by SMART
  • Other resources with information on 2WEL
  • Community annotation for 2WEL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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