2WFH Splicing date Apr 06, 2009
title The Human Slit 2 Dimerization Domain D4
authors E.Seiradake, A.C.Von Philipsborn, M.Henry, M.Fritz, H.Lortat-Jac M.Jamin, W.Hemrika, M.Bastmeyer, S.Cusack, A.A.Mccarthy
compound source
Molecule: Slit Homolog 2 Protein C-Product
Chain: A, B
Fragment: Dimerization Domain, Residues 726-907
Synonym: Human Slit 2 Domain D4, Slit-2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Human Embryonic Kidney Cells ( Ebna);
Expression_system_plasmid: Modified Ptt3
symmetry Space Group: I 41
R_factor 0.184 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.660 128.660 48.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4 enzyme
note 2WFH is a representative structure
Primary referenceStructure and functional relevance of the Slit2 homodimerization domain., Seiradake E, von Philipsborn AC, Henry M, Fritz M, Lortat-Jacob H, Jamin M, Hemrika W, Bastmeyer M, Cusack S, McCarthy AA, EMBO Rep. 2009 Jun 5. PMID:19498462
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2wfh.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 2WFH
  • CSU: Contacts of Structural Units for 2WFH
  • Likely Quarternary Molecular Structure file(s) for 2WFH
  • Structure Factors (401 Kb)
  • Retrieve 2WFH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WFH from S2C, [Save to disk]
  • Re-refined 2wfh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2WFH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WFH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WFH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wfh_B] [2wfh_A] [2wfh]
  • SWISS-PROT database: [O94813]
  • Domain organization of [SLIT2_HUMAN] by SWISSPFAM
  • Domains found in 2WFH: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
    • Other resources with information on 2WFH
  • Community annotation for 2WFH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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