2WFJ Isomerase Immunosuppressant date Apr 06, 2009
title Atomic Resolution Crystal Structure Of The Ppiase Domain Of Cyclophilin G In Complex With Cyclosporin A.
authors C.M.Stegmann, G.M.Sheldrick, M.C.Wahl
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase G
Chain: A
Fragment: Ppiase Domain, Residues 1-177
Synonym: Cyclophilin G, Clk-Associating Rs-Cyclophilin, Cas Peptidyl-Prolyl Isomerase G, Ppiase G, Rotamase G, Cars-Cyc Cars-Cyp, Sr-Cyclophilin, Sr-Cyp, Srcyp;
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3) (Novagen)
Expression_system_plasmid: Petm-11

Molecule: Cyclosporin A
Chain: B
Synonym: Cyclosporine, Ciclosporin, Ciclosporine
Engineered: Yes

Synthetic: Yes
Organism_scientific: Tolypocladium Inflatum
Organism_taxid: 29910
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.319 64.913 69.285 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.75 Å
ligand ABA, BMT, CL, DAL, EDO, MG, MLE, MVA, SAR enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Thermodynamic Influence of Trapped Water Molecules on a Protein-Ligand Interaction., Stegmann CM, Seeliger D, Sheldrick GM, de Groot BL, Wahl MC, Angew Chem Int Ed Engl. 2009 Jun 4. PMID:19499554
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2wfj.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 2WFJ
  • CSU: Contacts of Structural Units for 2WFJ
  • Likely Quarternary Molecular Structure file(s) for 2WFJ
  • Structure Factors (3634 Kb)
  • Retrieve 2WFJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WFJ from S2C, [Save to disk]
  • Re-refined 2wfj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WFJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WFJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WFJ, from MSDmotif at EBI
  • Fold representative 2wfj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wfj_A] [2wfj] [2wfj_B]
  • SWISS-PROT database: [Q13427]
  • Domain organization of [PPIG_HUMAN] by SWISSPFAM
  • Other resources with information on 2WFJ
  • Community annotation for 2WFJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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