2WFY Transferase date Apr 15, 2009
title Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, C Through Structure Guided Design
authors G.Kontopidis, M.J.Andrews, C.Mcinnes, A.Plater, L.Innes, S.Renach A.Cowan, P.M.Fischer
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: Cyclin-Dependent Kinase 2, P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cyclin-A2
Chain: B, D
Fragment: Residues 173-432
Synonym: Cyclin-A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Arg-Arg-B3l-Phe
Chain: E, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.621 115.813 157.911 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.53 Å
ligand ACE, B3L, NH2 BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceTruncation and Optimisation of Peptide Inhibitors of Cyclin-Dependent Kinase 2-Cyclin A Through Structure-Guided Design., Kontopidis G, Andrews MJ, McInnes C, Plater A, Innes L, Renachowski S, Cowan A, Fischer PM, ChemMedChem. 2009 May 26. PMID:19472269
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (2wfy.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (2wfy.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 2WFY
  • CSU: Contacts of Structural Units for 2WFY
  • Likely Quarternary Molecular Structure file(s) for 2WFY
  • Structure Factors (573 Kb)
  • Retrieve 2WFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WFY from S2C, [Save to disk]
  • Re-refined 2wfy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WFY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WFY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wfy_D] [2wfy_F] [2wfy_C] [2wfy_A] [2wfy] [2wfy_E] [2wfy_B]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 2WFY: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2WFY
  • Community annotation for 2WFY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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