2WGJ Transferase date Apr 20, 2009
title X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of
authors M.Mctigue, N.Grodsky, K.Ryan, M.Tran-Dube, J.J.Cui, B.Mroczkowski
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A
Fragment: Tyrosine Kinase Domain, Residues 1051-1348
Synonym: Hgf Receptor, Scatter Factor Receptor, Sf Receptor Receptor, Met Proto-Oncogene Tyrosine Kinase, C-Met;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 21 21 2
R_factor 0.214 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.926 94.192 45.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand VGH BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure Based Drug Design of Crizotinib (PF-02341066), a Potent and Selective Dual Inhibitor of Mesenchymal-Epithelial Transition Factor (c-MET) Kinase and Anaplastic Lymphoma Kinase (ALK)., Cui JJ, Tran-Dube M, Shen H, Nambu M, Kung PP, Pairish M, Jia L, Meng J, Funk L, Botrous I, McTigue M, Grodsky N, Ryan K, Padrique E, Alton G, Timofeevski S, Yamazaki S, Li Q, Zou H, Christensen J, Mroczkowski B, Bender S, Kania RS, Edwards MP, J Med Chem. 2011 Sep 22;54(18):6342-6363. Epub 2011 Aug 18. PMID:21812414
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2wgj.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2WGJ
  • CSU: Contacts of Structural Units for 2WGJ
  • Likely Quarternary Molecular Structure file(s) for 2WGJ
  • Structure Factors (158 Kb)
  • Retrieve 2WGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WGJ from S2C, [Save to disk]
  • Re-refined 2wgj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WGJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WGJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wgj_A] [2wgj]
  • SWISS-PROT database: [P08581]
  • Domain organization of [MET_HUMAN] by SWISSPFAM
  • Domain found in 2WGJ: [TyrKc ] by SMART
  • Other resources with information on 2WGJ
  • Community annotation for 2WGJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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