2WH6 Apoptosis date May 01, 2009
title Crystal Structure Of Anti-Apoptotic Bhrf1 In Complex With Th Domain
authors M.Kvansakul, D.C.S.Huang, P.M.Colman
compound source
Molecule: Early Antigen Protein R
Chain: A
Fragment: Bcl-2, Residues 1-160
Synonym: Nuclear Antigen, Ea-R, Bhrf1
Engineered: Yes
Organism_scientific: Epstein-Barr Virus Strain Ag876
Organism_taxid: 82830
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pduet

Molecule: Bcl-2-Like Protein 11
Chain: B
Fragment: Bh3, Residues 51-72
Synonym: Bcl2-L-11, Bcl2-Interacting Mediator Of Cell Death
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 32 2 1
R_factor 0.198 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.747 62.747 92.383 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand BR, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Apoptosis Inhibition by Epstein-Barr Virus BHRF1., Kvansakul M, Wei AH, Fletcher JI, Willis SN, Chen L, Roberts AW, Huang DC, Colman PM, PLoS Pathog. 2010 Dec 23;6(12):e1001236. PMID:21203485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (2wh6.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 2WH6
  • CSU: Contacts of Structural Units for 2WH6
  • Structure Factors (418 Kb)
  • Retrieve 2WH6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WH6 from S2C, [Save to disk]
  • Re-refined 2wh6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WH6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WH6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WH6, from MSDmotif at EBI
  • Fold representative 2wh6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wh6_A] [2wh6] [2wh6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2WH6
  • Community annotation for 2WH6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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