2WI4 Chaperone date May 08, 2009
title Orally Active 2-Amino Thienopyrimidine Inhibitors Of The Hsp90 Chaperone
authors P.A.Brough, X.Barril, J.Borgognoni, P.Chene, N.G.M.Davies, B.Davi M.J.Drysdale, B.Dymock, S.A.Eccles, C.Garcia-Echeverria, C.From A.Hayes, R.E.Hubbard, A.M.Jordan, M.Rugaard-Jensen, A.Massey, A. A.Padfield, R.Parsons, T.Radimerski, F.I.Raynaud, A.Robertson, S.D.Roughley, J.Schoepfer, H.Simmonite, A.Surgenor, M.Valenti, S P.Webb, M.Wood, P.Workman, L.M.Wright
compound source
Molecule: Heat Shock Protein, Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Atp-Binding Domain, Residues 1-236
Synonym: Hsp 86, Renal Carcinoma Antigen Ny-Ren-38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Skin
Tissue: Melanoma
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet19
Other_details: Cloned From Image\:4026275
symmetry Space Group: I 2 2 2
R_factor 0.23152 R_Free 0.28514
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.472 90.063 99.167 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ZZ4 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCombining Hit Identification Strategies: Fragment-Based and in Silico Approaches to Orally Active 2-Aminothieno[2,3-d]pyrimidine Inhibitors of the Hsp90 Molecular Chaperone., Brough PA, Barril X, Borgognoni J, Chene P, Davies NG, Davis B, Drysdale MJ, Dymock B, Eccles SA, Garcia-Echeverria C, Fromont C, Hayes A, Hubbard RE, Jordan AM, Jensen MR, Massey A, Merrett A, Padfield A, Parsons R, Radimerski T, Raynaud FI, Robertson A, Roughley SD, Schoepfer J, Simmonite H, Sharp SY, Surgenor A, Valenti M, Walls S, Webb P, Wood M, Workman P, Wright L, J Med Chem. 2009 Jul 17. PMID:19610616
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2wi4.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2WI4
  • CSU: Contacts of Structural Units for 2WI4
  • Likely Quarternary Molecular Structure file(s) for 2WI4
  • Structure Factors (141 Kb)
  • Retrieve 2WI4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WI4 from S2C, [Save to disk]
  • Re-refined 2wi4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WI4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WI4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WI4, from MSDmotif at EBI
  • Fold representative 2wi4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wi4_A] [2wi4]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 2WI4: [HATPase_c ] by SMART
  • Alignments of the sequence of 2WI4 with the sequences similar proteins can be viewed for 2WI4's classification [HS90A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HS90A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2WI4
  • Community annotation for 2WI4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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